WebDynamo. : Mapping Vector Field of Single Cells. Single-cell (sc)RNA-seq, together with RNA velocity and metabolic labeling, reveals cellular states and transitions at unprecedented resolution. Fully exploiting these … WebFeb 2, 2024 · Our analytical framework, dynamo, consists of four integral stages: 1) estimation of genome-wide kinetic rate constants and velocity vectors, 2) reconstruction of single-cell vector field functions with the resultant cell state and velocity samples, 3) in-depth analyses leveraging various differential geometry analyses, and 4) predictions of ...
Dynamo: Mapping Vector Field of Single Cells — dynamo 1.0.0 docume…
WebSingle-cell (sc)-RNA-seq, together with RNA-velocity and metabolic labeling, reveals cellular states and transitions at unprecedented resolution. Fully exploiting these data, … WebDynamo: Mapping Vector Field of Single Cells¶ Understanding how gene expression in single cells progress over time is vital for revealing the mechanisms governing cell fate … czech symbols and meanings
Protein velocity and acceleration from single-cell multiomics ...
WebDynamo: Mapping Transcriptomic Vector Fields of Single Cells. Inclusive model of expression dynamics with metabolic labeling based scRNA-seq / multiomics, vector field reconstruction, potential landscape mapping, differential geometry analyses, and most probably paths / in silico perturbation predictions. Installation - Ten minutes to dynamo - … WebDeciphering gene regulation through vector fields analysis in pancreatic endocrinogenesis¶. cellDancer could be integrated into downstream analysis, such as dynamo proposed by Qiu et al.. In this tutorial, the output of cellDancer (PancreaticEndocrinogenesis_cellDancer_estimation.csv) in pancreatic … binghamton university notary