Starbase cerna network
Webb1 jan. 2014 · Moreover, starBase v2.0 has been updated to provide the most comprehensive CLIP-Seq experimentally supported miRNA-mRNA and miRNA-lncRNA … WebbThis is an easy-to-use package for downloading, organizing, and integrative analyzing RNA expression data in GDC with an emphasis on deciphering the lncRNA-mRNA related …
Starbase cerna network
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Webb8 maj 2024 · Colorectal cancer (CRC) is one of the leading causes of cancer-related deaths worldwide and is derived from an accumulation of genetic and epigenetic changes. This study explored potential prognostic markers in CRC via the construction and in-depth analysis of a competing endogenous RNA (ceRNA) network, which was generated … WebbMoreover, starBase v2.0 has been updated to provide the most comprehensive CLIP-Seq experimentally supported miRNA-mRNA and miRNA-lncRNA interaction networks to …
Webb21 mars 2024 · StarBase[2] is a database for decoding miRNA-mRNA, miRNA-lncRNA,[3] miRNA-sncRNA, miRNA-circRNA,[3] miRNA-pseudogene, protein-lncRNA,[4] protein … WebbstarBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data. Although microRNAs (miRNAs), other non …
http://www.hzrna.com/11096.html Webb29 sep. 2024 · MALAT, LINC00943, LINC00261 and their paired miRNAs and mRNAs were used to reconstruct key ceRNA subnetworks. The MALAT1 ceRNA network consists of 1 …
Webb6 jan. 2024 · SPONGEdb overview: ceRNA networks for 22 cancer types as well as a pan-cancer ceRNA network for all 10 019 samples in TCGA have been inferred with SPONGE …
WebbIt is designed for decoding Pan-Cancer and Interaction Networks of lncRNAs, miRNAs, competing endogenous RNAs(ceRNAs), RNA-binding proteins (RBPs) and mRNAs from … harold feinstein flowers photographyWebb18 sep. 2013 · starBase v2.0 also provides visualization, analysis, discovery and downloading of above-mentioned large-scale functional genomics data. miRNA-lncRNA … harold feinstein flowersWebbConstruction of a ceRNA Network “miRNA sponge” has been largely acknowledged as a potential mechanism of circRNA working. Thus, a ceRNA network was constructed as … chaput feeneyWebbFunctional enrichment analysis showed that the ceRNA network might be involved in many cancer-related pathways, such as regulation of transcription from RNA polymerase II … harold fietsreparatieWebb13 okt. 2024 · The key DEGs, DEMs, and DELs worked together to construct the triple regulatory network, and identified key ceRNAs through their expression regulation. Target sites were predicted using StarBase. DEL sequences were retrieved from LNCipedia 6; the lncLocator database 7 was used to determine DEL cellular localizations. chaput florenceWebbceRNABase is designed for decoding Pan-Cancer ceRNA networks involving lncRNAs and mRNAs by analyzing 5599 tumor and normal samples and 108 CLIP-Seq (HITS-CLIP, PAR-CLIP, iCLIP, CLASH) datasets. Competing endogenous RNA database: predicted ceRNA candidates from genome. ceRNAFunction is a web server to predict lncRNA and protein … chaput forcepsWebb11 nov. 2024 · We sought to clarify the clinical relationship between REST/NRSF expression and the prognosis of glioma and explore the REST-associated competitive endogenous RNA (ceRNA) network in glioma. We downloaded RNA-seq, miRNA-seq and correlated clinical data of 670 glioma patients from The Cancer Genome Atlas and … harold figueroa